2.0.2 -> 2.1.1a upgrade screwed up...

Gallery version (not just "2"): 2.0.2
PHP version (e.g. 4.3.11): 4.4.2
PHPInfo Link (see FAQ):
Webserver (e.g. Apache 1.3.33): 1.3.36
Database (e.g. MySql 4.0.11): MySQL 4.1.19-standard
Activated toolkits (e.g. NetPbm, GD):
Operating system (e.g. Linux): *nix
Browser (e.g. Firefox 1.0): IE 6

I am trying to upgrade my gallery from 2.0.2 to 2.1.1a and the upgrade has screwed up in two places, Step 2 and Step 3.

At Step 2 it gave me a list of files that are "missing". Unfortunately this list of files was truncated so it was impossible to determine which files there were. The ones that I was able to figure out were present on my server and, even after replacing them again, still showed up as missing. Here is the list of missing files:

Yes...they are truncated just like that. Very lame.

At Step 3 the database conversion failed with the following error:

I started the upgrade over (with the start over link) and now it's made it to the module upgrade portion and it's running.

Has this totally screwed up my database? Any help would be greatly appreciated.

thanks.